Summarize DE results across methods

Creates a summary table showing the number of significant genes per DE method.

Usage

summarize_de_methods(de_list, padj_threshold = 0.05, lfc_threshold = 1)

Arguments

de_list

Named list of DE result lists (each with results_table)

padj_threshold

Adjusted p-value threshold (default 0.05)

lfc_threshold

Log2 fold-change threshold (default 1)

Value

Data frame with method, n_tested, n_sig, n_up, n_down

See also

Other differential-expression: compute_pca(), plot_heatmap_de(), plot_ma(), plot_pca(), plot_volcano(), run_deseq2(), run_vst()