MA plot of DE results — plot_ma • coMMpass

Plots mean expression (x-axis) vs log2 fold change (y-axis), a standard diagnostic for RNA-seq DE analysis.

Usage

plot_ma(
  de_results,
  lfc_threshold = 1,
  padj_threshold = 0.05,
  title = "MA Plot"
)

Arguments

de_results: Data frame with DE results
lfc_threshold: Log2 fold-change threshold for coloring (default 1)
padj_threshold: Adjusted p-value threshold (default 0.05)
title: Plot title

Value

A ggplot2 object

See also

Other differential-expression: compute_pca(), plot_heatmap_de(), plot_pca(), plot_volcano(), run_deseq2(), run_vst(), summarize_de_methods()