Summarize cytogenetic alteration frequencies

Computes frequency and percentage for each marker and risk group.

Usage

summarize_cytogenetics(cyto_data)

Arguments

cyto_data

Data frame from extract_cytogenetic_data()

Value

Data frame with marker, n_positive, n_tested, pct columns

See also

Other cytogenetics: calculate_cooccurrence(), compute_riss(), extract_cytogenetic_data(), plot_cooccurrence_heatmap(), plot_cytogenetic_oncoprint(), plot_expression_by_subtype()

Examples

if (FALSE) { # \dontrun{
cyto <- arrow::read_parquet("data/raw/clinical/cytogenetic_data.parquet")
summarize_cytogenetics(cyto)
} # }