GSEA running enrichment score plot — plot_gsea_running_score • coMMpass

Shows the running enrichment score for a specific gene set from fgsea results, along with the ranked gene positions.

Usage

plot_gsea_running_score(
  gsea_result,
  gene_set_name,
  gene_sets = NULL,
  title = NULL
)

Arguments

gsea_result: List from run_gsea() containing results and ranked_genes
gene_set_name: Name of the gene set to plot
gene_sets: Named list of gene sets (required for tick marks). If NULL, attempts to retrieve from msigdbr using the collection.
title: Plot title (default: gene set name)

Value

A ggplot2 object

See also

Other pathway: annotate_de_results(), annotate_genes(), plot_enrichment_barplot(), plot_enrichment_dotplot(), run_gsea(), run_ora(), run_pathway_analysis()