Dot plot of enrichment results

Creates a dot plot of the top N enriched pathways. Dot size represents gene set size, color represents significance (adjusted p-value or NES).

Usage

plot_enrichment_dotplot(
  enrich_result,
  n = 15L,
  color_by = "padj",
  title = "Enrichment Dot Plot"
)

Arguments

enrich_result

Data frame with pathway enrichment results. Must contain columns: pathway, padj, and one of: NES (GSEA), overlap (ORA).

n

Number of top pathways to show (default 15)

color_by

Which metric to color by: "padj" (default) or "NES"

title

Plot title

Value

A ggplot2 object

See also

Other pathway: annotate_de_results(), annotate_genes(), plot_enrichment_barplot(), plot_gsea_running_score(), run_gsea(), run_ora(), run_pathway_analysis()