Returns a tibble documenting all known variables in the CoMMpass dataset, including clinical, biospecimen, and RNA-seq data. Each variable includes its category, data type, units, description, typical range, and a link to the GDC data dictionary.
Value
A tibble with columns: variable, category, data_type, units, description, typical_range, gdc_link
See also
Other data-dictionary:
get_variable_docs()
Examples
dd <- get_commpass_data_dictionary()
# Filter to clinical variables
dplyr::filter(dd, category == "clinical")
#> # A tibble: 19 × 7
#> variable category data_type units description typical_range gdc_link
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 submitter_id clinical character NA Patient id… MMRF_0001 to… https:/…
#> 2 project_id clinical character NA GDC projec… MMRF-COMMPASS https:/…
#> 3 age_at_diagnosis clinical integer days Age at pri… 10000-35000 … https:/…
#> 4 gender clinical character NA Patient se… female, male… https:/…
#> 5 race clinical character NA Patient ra… white, black… https:/…
#> 6 ethnicity clinical character NA Patient et… not hispanic… https:/…
#> 7 vital_status clinical character NA Patient vi… Alive, Dead,… https:/…
#> 8 days_to_death clinical integer days Number of … 0-5000+ https:/…
#> 9 days_to_last_fol… clinical integer days Number of … 0-5000+ https:/…
#> 10 primary_diagnosis clinical character NA ICD-O-3 mo… Plasma cell … https:/…
#> 11 disease_type clinical character NA Type of di… Multiple Mye… https:/…
#> 12 site_of_resectio… clinical character NA Anatomic s… Bone marrow,… https:/…
#> 13 tissue_or_organ_… clinical character NA Anatomic s… Bone marrow https:/…
#> 14 year_of_diagnosis clinical integer year Calendar y… 2005-2020 https:/…
#> 15 classification_o… clinical character NA Tumor clas… primary, rec… https:/…
#> 16 prior_malignancy clinical character NA Whether pa… yes, no, not… https:/…
#> 17 prior_treatment clinical character NA Whether pa… yes, no, not… https:/…
#> 18 ajcc_staging_sys… clinical character NA AJCC stagi… various edit… https:/…
#> 19 days_to_last_kno… clinical integer days Days from … 0-5000+ https:/…