Get DE results for API response

Reads differential expression results from the targets store. Returns the DESeq2 results table with gene symbols.

Usage

api_get_de_results(padj_threshold = 1, lfc_threshold = 0, store = "_targets")

Arguments

padj_threshold

Filter to genes with padj below this threshold (default: 1, i.e., no filter)

lfc_threshold

Filter to genes with absolute log2FC above this threshold (default: 0, i.e., no filter)

store

Path to targets store

Value

A data frame of DE results, or NULL if unavailable

See also

Other api: api_get_clinical(), api_get_pathways(), api_get_survival(), api_list_datasets(), api_serve(), generate_api_endpoint(), generate_api_index()